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When doing SVN actions (update, commit, ecc) and you need to enter username/password, NetBeans displays a input window, but the SVN url (and options like "SSH identity file") are wrong (they're picked from another project). Actually, if you enter RIGHT values for the repository (eg. the correct one, not the displayed one) everything goes OK, so maybe it's only a matter of view. I'm using SVNKit, I've not tested CLI or JavaHL.
*** This bug has been marked as a duplicate of bug 228410 ***