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NB Dev (20090416) The only affected component (by checking/unchecking this checkbox) is list of the plugins, so the checkbox should be located closer to this component. I think it's similar to problem with Activate button, but solution wouldn't be different background colour ;(
The design of the checkbox matches exactly the specification as designed by Jano and inherited by Ondřej. We'll be discussing the specification with Ondřej, but generally I do not think that not being "tied to anything" classifies for anything higher than P5.
*** This issue has been marked as a duplicate of 163411 ***
v/c