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I am using Netbeans 5.5 RC1 with a dual monitor setup. When I have the IDE on my secondary monitor and right click, the menu pops up on the right edge of my primary monitor. I did not have this issue with the 5.5 Beta 2, so it appears to have been introduced in between releases. I also have subversion and profiler installed.
I'm not able to reproduce the error, popup menu works OK for me. Could you please mention your build info (menu Help -> About -> Details -> Copy Info) and could you also test other Java apps, like SwingSet2 demo i9n JDK.
After offline discussion with reporter - system is JDK 1.5.0_07, problem was random and didn't reappear. I'll close the issue for now - if problem reappers, please reopen, with reproductible scenario, thanks.