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I Opened one project(Args), built, set breakpoint at line 9, pushed "debug main project". Debugger did not stop on breakpoint, but executed the program...
Toggle breakpoints are (mostly) working on Solaris (probably Linux as well) but completely broken on Windows. This description doesn't really give enough detail to be able to figure out why you're not stopping. Do you get the breakpoint annotation on line 9? Or is it ignored? If its ignored then you're probably seeing another case of IZ81255. If its being ignored then I can't tell you why without knowing more information. What build are you using? Is it the nightly? Or the beta2 build? If its beta2 then breakpoint support wasn't working and the debugger is turned of by default.
There were used nightly build on Linux(JDS3) platform. Yes, I see breakpoint annotations in this case, but they are ignored...
I think this was fixed around the same time it was filed. I believe it just didn't make it into the nightly build as soon as expected. Reopen if you still see this problem.