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similar to issue #66489 - JMManager.cleanUpCodebases iterates cp roots using file object array. Iterating through list of entries would save costly conversions to FO and back to URI/URL.
It looks like P4 according to bug priority guidelines: "Minor performance deficiency with minimal effect on a feature". Or is there any measurable performance impact? Anyway cleanUpCodebases() needs both FileObjects and URLs. URLs are held in maps (resp. URIs are held), FileObjects are needed to pass them to SourceLevelQuery.
Javacore module was replaced by Retouche infrastructure. This bug is not valid in trunk any more.
Reorganization of java component