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During deployment of EJB module using NetBeans deployment utility there are added a new JMS resources on app server. But it is usualy not necessary, I think disable/enable of adding new jms resources would be very helpful ! thanks
It is not possible with current j2eeserver APIs. Enhancement was filed against j2eeserver: issue 62922.
This old bug may not be relevant anymore. If you can still reproduce it in 8.2 development builds please reopen this issue. Thanks for your cooperation, NetBeans IDE 8.2 Release Boss