I have a project with two source code directories: path/Src and path/Test. Both
directory contain Java code with similar package stucture. The path/Src has
application code and path/Test has the unit tests.

Using the refactor menu, moving and renaming Java classes is fine the in
path/Src directory. The problem is with the 2nd directory, path/Test. 

If I move or rename a class in path/Test, the file is moved to path/Src with the
same directory and file name.

For example:

directory structure of path/Src
path/Src/com/exmple/ExcitingLogic.java
path/Src/com/exmple/code/LessExcitingLogic.java

directory structure of path/Test:
path/Test/com/example/ExcitingLogicTest.java
path/Test/com/exmple/code/LessExcitingLogicTest.java


If I move ExcitingLogicTest.java in the path/Test/com/example to the
path/Test/com/exmple/code directory, the ExcitingLogicTest.java would really be
moved to path/Src/com/exmple/code directory! Eeeek.


The resulting file structure would be:

directory structure of path/Src (note the LessExcitingLogicTest.java was
incorrectly moved)
path/Src/com/exmple/ExcitingLogic.java
path/Src/com/exmple/code/LessExcitingLogic.java
path/Src/com/exmple/code/LessExcitingLogicTest.java

directory structure of path/Test (note the missing ExcitingLogicTest.java):
path/Test/com/example/ExcitingLogicTest.java


Product Version: NetBeans IDE 4.0 (Build200412081800)
IDE Versioning: IDE/ spec=4.50.1 impl=20041208100
OS: Windows XP version 5.1 running on x86
Java 1.4.2_05
VML Java HotSpot client VM 1.4.2_05-b04