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[release40 RC1, JDK 1.5.0_01] I've created class with compilation error (missing import), the line was error annotated. I invoked Fix imports from editor pop-up menu, the import was added but error annotation was still there. The project could be compiled and run successfully and annotation was still there. Once I modified the line, annotation was removed and after that was working as expected.
I would say this is duplicate of issue #32882
*** Issue 53035 has been marked as a duplicate of this issue. ***
*** This issue has been marked as a duplicate of 32882 ***
Verified dupe. Closing.