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NetBeans IDE 200408101800 on java 1.4.2_05 1, Start debugger 2, Invoke Pause action => program counter is not shown and no thread is marked as current.
PC will show once you choose a thread in the threads view ... from that point the thread will be marked as 'current' and the next time you pause the program, PC from that thread will be shown. Please note that PC will only show if you have source file for that location.
Verified ... and Closing all issues resolved into NetBeans 6.7 and earlier.