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It is not necessary to reset folder attributes. It is possible ignore them before they are passed to ordering method.
The reviewers think that the whole purpose of Windows2 and Windows2Local separation would be in vain if the Windows2 folder was not kept read only. That is why they explicitly request to: - do not write ordering attributes to it - do not write topComponent.settings file to it and of course do not write anything else. The first problem should be addressable by better usage of Utilities.topologicalSort and by providing some kind of filtered Map into it that would virtually mask the attributes instead of removing them. The second problem could be addressed by copying the description of topComponent from the Windows2 to Windows2Local directory prior creation of InstanceDataObject and of course (in future) by using registry and not relying on InstanceDataObject at all.
Fixed in winsys branch. Both folder attributes and TopComponent's settings files are not set/saved in module folder Windows2.
verified - fixed by reporter