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JavaDoc for module core/registry published on website <http://www.netbeans.org/download/dev/javadoc/UnsupportedAPIs/RegistryOverFSAPI/index.html> is incorrect. It contain classes from openide/registry module. It is probably caused by the fact that these two modules uses both the same package "org.netbeans.api.registry". The core/registry has only one public class FileSystemContextFactory. If you build JavaDoc for this module from command line everything is fine.
I had to rename the package and it seems to fixed also this problem.
Jesse told me that this is a problem in JDK's javadoc implementation and that it has been fixed in 1.4.2. And I can confirm that on my local computer when using 1.4.2 everything works fine. Ruda, please switch the javadoc build to use JDK 1.4.2.
Agreed. JDK 1.4.2 was recently released, so there should not be objections to using a beta or internal build in the build process. The main build of the product could stay using 1.4.0 for safety (to make sure that we do not accidentally use any methods introduced after 1.4.0, if there are any), while switching the JDK version used for the Javadoc build to 1.4.2. 1.4.0 has some problems in Javadoc. (For example, this one - when running Javadoc on a set of sources in a package, if the classpath contains other (sourceless) public classes in the same package, bogus HTML summaries will be generated for them too.) 1.4.1 has a *lot* of problems and should not be used. But so far, 1.4.2 seems pretty good as far as stability of Javadoc goes.
JDK 1.4.2 has been recently employed in javadoc generation. Would you please check, whether this issue is still valid or fixed?
I cannot. I do not have any module with conflicting packages anymore. I renamed it.
Reopen if this issue reappears.
At least the problem with "ghost" classes seems to be fixed for the dev Javadoc build. Compare: http://www.netbeans.org/download/release35/javadoc/CompilerAPI/org/openide/loaders/package-summary.html vs. http://www.netbeans.org/download/dev/javadoc/CompilerAPI/org/openide/loaders/package-summary.html