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Steps to reproduce: 1) Create Empty Java Application project with one src folder 2) Add another source directory (new or existing) by pop-up on Packages | Add source directory 3) Create new package and as Java root select newly added source directory No package is listed under Packages node, but packages were created on filesystem.
I tried it once more and got exception.
Created attachment 8829 [details] exc stack trace
Works for me.
Verified.
As described in http://www.netbeans.org/servlets/ReadMsg?msgId=619519&listName=nbdiscuss the current work on projects prototype has been stopped. Marking issue as CLOSED.