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While using the debugger I was using the Step Over (F8) and popping from a stack the stack is not being popped "element removed" it does however work if you use the step into (F7) and step through all the other classes and instructions until you arrive back at the class I was working in. Another way i found to get it to "pop" correctly was to put a break-point after the pop instruction and continue to the break-point. Just wanted to share this if it is in fact a true "bug" or i am just not using the debugger function correctly.
Can you please describe that on some specific piece of code? Pop should work unless there's some native call to be popped off. Subsequent F7 should re-enter the method that was popped off the stack.