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It looks like this is general NetBeans or rather Lion issue. Use-case: 1. Start profiling session with anagram application (at Space 1) 2. Move application window to another Space (to Space 2) 3. Press close window button 4. "Application Finished" dialog appears at Space 2 It is not possible to press Yes/No buttons as "Application Finished" is shown in Space 2 while NetBeans Ide is shown in Space 1. User can not close/continue - and must kill NetBeans. This use case is very common in case user switches spaces after pressing "Profile Main Project".
Can you still use (do they respond) the OS window buttons (ie. cross for close ...) on the dialog? Or is the killing of netbeans the only choice - in this case can you please create threaddump via VisualVM and post it here.
Please check whether this affects also other NetBeans dialogs (Open File, etc.) unrelated to profiler. It might be a general problem caused by the way how windowsystem creates and places the dialogs.
I am not able to reproduce it with a dev. build from 27th Oct. 2011. Application dialog is shown on 'Space 2', but when I gave it focus, I am switched to 'Space 1' and I can close the dialog by clicking on Yes or No.