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The reload target in the Ant-based harness should do nearly the equivalent of the current clean target first, except it should not delete ${cluster}/config/Modules/${code.name.base.dashes}.xml (may let it be overwritten). This should prevent ModuleList from detecting the module removal in the middle of the build (due to native file listening?).
Slightly different approach. Leave the reload target alone, and just make the more general fix of ensuring that Clean & Build does not cause the config file to be temporarily deleted. Useful if you just rebuild a module that happens to be part of a running app.
core-main #9e9a6cd17821
Integrated into 'main-golden', will be available in build *201103040000* on http://bits.netbeans.org/dev/nightly/ (upload may still be in progress) Changeset: http://hg.netbeans.org/main/rev/9e9a6cd17821 User: Jesse Glick <jglick@netbeans.org> Log: #196192: Clean & Build module should not reload it