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Created attachment 105916 [details] break point error Start Debugger Sanity Test. Go to, Test suite: Apply Code Changes After you set breakpoint at line #25 and choose "Debug File" you should see similar error (see attachment).
For the record, I have seen this as well on my Linux Mint.
Created attachment 105968 [details] screen disabling breakpoint for build.xml results with incorrectly redrawn background
This is a bug in drawing of annotations. Debugger can not anything with this. *** This bug has been marked as a duplicate of bug 192627 ***