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In 6.5.1 a project with excluded files would show without the 'red' mark on the project for excluded files that didn't compile correctly. As of 6.7 excluded files are being included in the error parsing and showing that a project has errors even though the items will not be visible in the normal project view.
BTW I'll be away for 2 weeks so won't be able to reply till I get back.
Still present in 6.7.1
*** This issue has been marked as a duplicate of 170231 ***
Not a duplicate of issue #170231 - excludes on source path where supported 6.0-6.5 and the support was accidentally lost during the rewrite to indexing API. Should be fixed in the current trunk: http://hg.netbeans.org/jet-main/rev/c1d546c6f26e
Should be fixed in the current trunk.
*** Issue 168906 has been marked as a duplicate of this issue. ***