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If one closes Customization dialog using window [X] button it works as OK not as Cancel and such behavior is completely wrong.
it should be pretty simple fix. Yulia, please have a look (likely line 358 at NbCustomizeSelectionDialog.java).
Fixed: http://hg.netbeans.org/main?cmd=changeset;node=a8b757888c5a
Integrated into 'main-golden', will be available in build *200904220201* on http://bits.netbeans.org/dev/nightly/ (upload may still be in progress) Changeset: http://hg.netbeans.org/main-golden/rev/a8b757888c5a User: Yulia Novozhilova <ynov@netbeans.org> Log: Issue #163191: [X] button works as OK not Cancel at cutomization dialog