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1. Rightclick "Databases" node and choose "Register MySQL server". 2. Specify valid host name, port, login and password, check "Remember Password" checkbox, specify path to start and stop command and specify start/stop arguments. 3. Start MySQL server. 4. Stop it. Result: Message that MySQL server can't be stopped without password appears. But I set password and even save it. Can we use for stopping this password. Workaround: set for stop arguments: "-u root -p <password> shutdown".
I think you are assuming that the password specified in the Basic properties panel is applied to the stop command? Because it's not and to do so would require some real thought as we just don't know what command a user is going to use to stop the server.