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My projects use UTF-8 encoding. NB runs on windows using CP1250. When I open NetBeans, several of files that leaved opened by last closing IDE are now rendered using the windows endoding and so the non-ASCII characters are unreadable. I have to close this files and open them again. Then they are rendered in the right way.
This should be fixed now in 6.5, thanks for your report anyway *** This issue has been marked as a duplicate of 132664 ***