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I tried to expand the MySQL node, got deadlock.
Created attachment 60700 [details] Thread dump of the deadlock
I'm assuming this doesn't happen every time? If it does, then this is a P1...
Not a deadlock. It is caused by making a call into the driver while holding the lock on ServerInstance. Then the AWT thread is blocked until the driver call returns.
No, this does not happen every time. I believe it happened when I tried to expand the MySQL node while it was still checking the status (i.e. you have to do it very quickly after expanding the Databases node). This is not a P1.
Petr, please verify, I was not able to reproduce, but using the thread dump I put in some changes that I think should fix it. http://hg.netbeans.org/main?cmd=changeset;node=072f3763e4db