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Reproduced in build080402. Steps to reproduce: Create Project with index file; Close opened index.php; Rename Project but don't rename Project folder; Open index.php file in editor; Rename Project And Project folder. All data form project folder is deleted.
I cannot reproduce your problem. Feel free to reopen this issue if the problem still exists. Thanks. Product Version: NetBeans IDE Dev (Build 080405) Java: 1.5.0_15; Java HotSpot(TM) Client VM 1.5.0_15-b04 System: Linux version 2.6.24-gentoo-r4 running on i386; UTF-8; cs_CZ (nb)
Verified in build080407.