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This is a pretty big limitation of Axis support. This should be implemented on a project's level.
The Axis2 Library Customizer was added to Axis2 Web Services node.
Dhese are diffs: http://hg.netbeans.org/main/contrib?cmd=changeset;node=e852e57ae447
actually only "libraries" which were added to the project by "Add Jar" action can be added as libraries to aar files. I'd expect that I'll be able to add also general libraries to aar (ie. if I have Struts lib in a project then I'd expect that I'll be able to pick up a jar (or all jars) which come(s) with this library and add it to aar file) - or would this be a RFE?