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1. Create new schema. 2. Invoke Find Usages for something. 3. Switch to diagram mode (Show Graph...) 4. Resize the bottom panel with Usages tab. Result: now diagram items are not positioned in the center. They should.
This old bug may not be relevant anymore. If you can still reproduce it in 8.2 development builds please reopen this issue. Thanks for your cooperation, NetBeans IDE 8.2 Release Boss