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When one creates Groovy project, default "Source folders" directory is created under project root (on filesystem it is found as "src" directory under Netbeans project root directory). It would be nice, if one could specify location of sources in a same way like in Java project (right-click on Java project root, open Properties dialog - you can see Sources node, where you can add source package folders from filesystem). Product Version: NetBeans IDE 6.0 (Build 200711261600) 1196764559000_nb-groovy.zip
Groovy project was dropped. Java SE should be used instead, where this is possible. More integration coming soon.