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1. Create 2 schemas. 2. Create a reference from the second schema to the first. 3. For the first schema: popup menu -> Properties 4. Change Name property and close the window. 5. Open second schema in Schema View. Result: Referenced Schemas -> include leads to broken reference. Evidently, simple rename is performed instead of refactoring.
This old bug may not be relevant anymore. If you can still reproduce it in 8.2 development builds please reopen this issue. Thanks for your cooperation, NetBeans IDE 8.2 Release Boss