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I think the dependency of Loaded classes view - feature of debugger - on profiler looks strange. There should be at least the old classes view available or the dependency should be resolved better.
The new (JDK 1.6) classes view must depend on profiler - it uses it's GUI. The old (JDK 1.5) classes view was not considered important enough to bother with dependencies and further splitting the functionality. Also from studies it's apparent that only a few users are actually using the traditional classes view, the new functionality is much more interesting and is of a more use. I propose to close this as won't-fix.
It still is not clear for me. There should be an 'independent' module providing the UI for both profiler and debugger. And debugger should depend on the library. But if it is not possible to do it, close it as wont fix.
The modularity needs to be discussed with profiler team. It would have to be an autoload module.
Closing as Martin has proposed. The mentioned modularity can be a subject to discussion, but primarily it is as designed.
Verified ... and Closing all issues resolved into NetBeans 6.7 and earlier.