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see 109197 for reference to similar issue. font size in word Commands is smaller than default font size or user chosen font size, but needed to be same for some other locales. see word Commands on attached gif. the other smaller words in gif are fixed from 109197.
Created attachment 46210 [details] image
The look-and-feel is defined in graph module. Reassigning.
Fixed in main trunk by changing the font size in VMDNetBeans60ColorScheme
can verify QUESTION - the font size in general of the items/labels in flow window looks smaller than in other mobility windows like analyze or screen, which seem to be same size font as rest of ide - is this ok ? ken.frank@sun.com
Yes, it is different. It is because the scene is using font obtained using "Font.decode(null)" method call. This method call does not count with "--fontsize" command line argument.