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After a new installation of NetBeans 3.5 and upgrade with the MDR components via the update center I opened the MDR Manager. The first attempt to naivgate in the tree results in an SorageBadRequestException.
Created attachment 12680 [details] ide.log
Sorry, but I cannot reproduce this. If it still occurs please reopen this issue and provide more info on how to reproduce it. You may want to try to delete storage files and let the storage reboot itself if this happens. The storage files are located under $nbuserdir/system/MDRepositories/