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Bug 255954 - "Could not initialize org.eclipse.jgit.*" for any Git command/process
Summary: "Could not initialize org.eclipse.jgit.*" for any Git command/process
Status: RESOLVED FIXED
Alias: None
Product: versioncontrol
Classification: Unclassified
Component: Git (show other bugs)
Version: 8.0.2
Hardware: PC Windows 7
: P2 normal (vote)
Assignee: Ondrej Vrabec
URL:
Keywords:
Depends on:
Blocks:
 
Reported: 2015-10-15 16:07 UTC by danny_b
Modified: 2015-10-16 13:21 UTC (History)
1 user (show)

See Also:
Issue Type: DEFECT
Exception Reporter:

Attachments
Error while inserting a new Repository URL with Team -> Git -> Clone... (133.79 KB, text/plain)
2015-10-15 17:45 UTC, danny_b 		Details
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Description danny_b 2015-10-15 16:07:44 UTC 
Anything that has to do with Git/JGit functions blocks and returns errors.

Here's some examples using NetBeans IDE 8.0.2 (Build 201411181905) + Java 1.8.0_60; Java HotSpot(TM) 64-Bit Server VM 25.60-b23:


Team -> Git -> Clone... -> Typing in "Repository URL" and returns

java.lang.NoClassDefFoundError: Could not initialize class org.eclipse.jgit.transport.URIish
	at org.netbeans.libs.git.GitURI.<init>(GitURI.java:76)
	at org.netbeans.modules.git.ui.repository.remote.RemoteRepository.getURI(RemoteRepository.java:184)
	at org.netbeans.modules.git.ui.repository.remote.RemoteRepository.getURI(RemoteRepository.java:177)
	at org.netbeans.modules.git.ui.repository.remote.RemoteRepository.itemStateChanged(RemoteRepository.java:262)
	at javax.swing.JComboBox.fireItemStateChanged(JComboBox.java:1223)
	at javax.swing.JComboBox.selectedItemChanged(JComboBox.java:1271)
	at javax.swing.JComboBox.contentsChanged(JComboBox.java:1330)
	at javax.swing.AbstractListModel.fireContentsChanged(AbstractListModel.java:118)
	at javax.swing.DefaultComboBoxModel.setSelectedItem(DefaultComboBoxModel.java:93)
	at javax.swing.JComboBox.actionPerformed(JComboBox.java:1314)
	at javax.swing.plaf.basic.BasicComboBoxUI$Handler.focusLost(BasicComboBoxUI.java:1852)
	at java.awt.AWTEventMulticaster.focusLost(AWTEventMulticaster.java:230)
	at java.awt.AWTEventMulticaster.focusLost(AWTEventMulticaster.java:229)
	at java.awt.Component.processFocusEvent(Component.java:6427)
	at java.awt.Component.processEvent(Component.java:6291)
	at java.awt.Container.processEvent(Container.java:2236)
	at java.awt.Component.dispatchEventImpl(Component.java:4891)
	at java.awt.Container.dispatchEventImpl(Container.java:2294)
	at java.awt.Component.dispatchEvent(Component.java:4713)
	at java.awt.KeyboardFocusManager.redispatchEvent(KeyboardFocusManager.java:1954)
	at java.awt.DefaultKeyboardFocusManager.typeAheadAssertions(DefaultKeyboardFocusManager.java:995)
	at java.awt.DefaultKeyboardFocusManager.dispatchEvent(DefaultKeyboardFocusManager.java:661)
	at java.awt.Component.dispatchEventImpl(Component.java:4762)
	at java.awt.Container.dispatchEventImpl(Container.java:2294)
	at java.awt.Component.dispatchEvent(Component.java:4713)
	at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
	at java.awt.EventQueue.access$500(EventQueue.java:97)
	at java.awt.EventQueue$3.run(EventQueue.java:709)
	at java.awt.EventQueue$3.run(EventQueue.java:703)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:76)
	at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:86)
	at java.awt.EventQueue$4.run(EventQueue.java:731)
	at java.awt.EventQueue$4.run(EventQueue.java:729)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:76)
	at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
	at org.netbeans.core.TimableEventQueue.dispatchEvent(TimableEventQueue.java:159)
[catch] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
	at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
	at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:109)
	at java.awt.WaitDispatchSupport$2.run(WaitDispatchSupport.java:184)
	at java.awt.WaitDispatchSupport$4.run(WaitDispatchSupport.java:229)
	at java.awt.WaitDispatchSupport$4.run(WaitDispatchSupport.java:227)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.awt.WaitDispatchSupport.enter(WaitDispatchSupport.java:227)
	at java.awt.Dialog.show(Dialog.java:1084)
	at org.netbeans.core.windows.services.NbPresenter.superShow(NbPresenter.java:1065)
	at org.netbeans.core.windows.services.NbPresenter.doShow(NbPresenter.java:1115)
	at org.netbeans.core.windows.services.NbPresenter.run(NbPresenter.java:1087)
	at org.netbeans.core.windows.services.NbPresenter.run(NbPresenter.java:128)
	at org.openide.util.Mutex.doEventAccess(Mutex.java:1376)
	at org.openide.util.Mutex.readAccess(Mutex.java:278)
	at org.netbeans.core.windows.services.NbPresenter.show(NbPresenter.java:1072)
	at java.awt.Component.show(Component.java:1673)
	at java.awt.Component.setVisible(Component.java:1625)
	at java.awt.Window.setVisible(Window.java:1014)
	at java.awt.Dialog.setVisible(Dialog.java:1005)
	at org.netbeans.modules.git.ui.clone.CloneWizard.show(CloneWizard.java:108)
	at org.netbeans.modules.git.ui.clone.CloneAction$1.run(CloneAction.java:188)
	at org.netbeans.modules.git.ui.clone.CloneAction$1.run(CloneAction.java:185)
	at org.openide.util.Mutex.doEventAccess(Mutex.java:1376)
	at org.openide.util.Mutex.readAccess(Mutex.java:278)
	at org.netbeans.modules.git.ui.clone.CloneAction.performClone(CloneAction.java:185)
	at org.netbeans.modules.git.ui.clone.CloneAction.performClone(CloneAction.java:164)
	at org.netbeans.modules.git.ui.clone.CloneAction.actionPerformed(CloneAction.java:160)
	at org.openide.awt.InjectorExactlyOne.actionPerformed(InjectorExactlyOne.java:78)
	at org.openide.awt.ContextAction$Performer.actionPerformed(ContextAction.java:226)
	at org.openide.awt.ContextManager.actionPerformed(ContextManager.java:260)
	at org.openide.awt.ContextAction.actionPerformed(ContextAction.java:109)
	at org.openide.util.actions.ActionInvoker$1.run(ActionInvoker.java:93)
	at org.openide.util.actions.ActionInvoker.doPerformAction(ActionInvoker.java:116)
	at org.openide.util.actions.ActionInvoker.invokeAction(ActionInvoker.java:99)
	at org.openide.awt.GeneralAction$BaseDelAction.actionPerformed(GeneralAction.java:234)
	at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022)
	at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2348)
	at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
	at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259)
	at javax.swing.AbstractButton.doClick(AbstractButton.java:376)
	at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:833)
	at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:877)
	at java.awt.Component.processMouseEvent(Component.java:6535)
	at javax.swing.JComponent.processMouseEvent(JComponent.java:3324)
	at java.awt.Component.processEvent(Component.java:6300)
	at java.awt.Container.processEvent(Container.java:2236)
	at java.awt.Component.dispatchEventImpl(Component.java:4891)
	at java.awt.Container.dispatchEventImpl(Container.java:2294)
	at java.awt.Component.dispatchEvent(Component.java:4713)
	at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4888)
	at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4525)
	at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4466)
	at java.awt.Container.dispatchEventImpl(Container.java:2280)
	at java.awt.Window.dispatchEventImpl(Window.java:2750)
	at java.awt.Component.dispatchEvent(Component.java:4713)
	at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758)
	at java.awt.EventQueue.access$500(EventQueue.java:97)
	at java.awt.EventQueue$3.run(EventQueue.java:709)
	at java.awt.EventQueue$3.run(EventQueue.java:703)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:76)
	at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:86)
	at java.awt.EventQueue$4.run(EventQueue.java:731)
	at java.awt.EventQueue$4.run(EventQueue.java:729)
	at java.security.AccessController.doPrivileged(Native Method)
	at java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:76)
	at java.awt.EventQueue.dispatchEvent(EventQueue.java:728)
	at org.netbeans.core.TimableEventQueue.dispatchEvent(TimableEventQueue.java:159)
	at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201)
	at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116)
	at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
	at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93)
	at java.awt.EventDispatchThread.run(EventDispatchThread.java:82)



File -> New Project... -> PHP / PHP Application with Existing Sources -> Next ->
Sources Folder (Path containing a valid ".git" directory) -> Finish then returns

java.lang.NoClassDefFoundError: Could not initialize class org.eclipse.jgit.util.FS
	at org.eclipse.jgit.lib.BaseRepositoryBuilder.setupWorkTree(BaseRepositoryBuilder.java:620)
	at org.eclipse.jgit.lib.BaseRepositoryBuilder.setup(BaseRepositoryBuilder.java:556)
	at org.eclipse.jgit.storage.file.FileRepositoryBuilder.build(FileRepositoryBuilder.java:92)
	at org.netbeans.libs.git.jgit.Utils.getRepositoryForWorkingDir(Utils.java:102)
	at org.netbeans.libs.git.jgit.JGitRepository.getRepository(JGitRepository.java:76)
	at org.netbeans.libs.git.jgit.JGitRepository.increaseClientUsage(JGitRepository.java:64)
	at org.netbeans.libs.git.GitClient.<init>(GitClient.java:312)
	at org.netbeans.libs.git.GitRepository.createClient(GitRepository.java:212)
	at org.netbeans.libs.git.GitRepository.createClient(GitRepository.java:164)
	at org.netbeans.modules.git.client.GitClient.<init>(GitClient.java:213)
	at org.netbeans.modules.git.Git.getClient(Git.java:216)
	at org.netbeans.modules.git.Git.getClient(Git.java:212)
	at org.netbeans.modules.git.Git.getClient(Git.java:208)
	at org.netbeans.modules.git.FilesystemInterceptor.beforeCreate(FilesystemInterceptor.java:169)
	at org.netbeans.modules.versioning.DelegatingVCS$4.beforeCreate(DelegatingVCS.java:343)
	at org.netbeans.modules.versioning.core.filesystems.VCSFilesystemInterceptor$DelegatingInterceptor.beforeCreate(VCSFilesystemInterceptor.java:667)
	at org.netbeans.modules.versioning.core.filesystems.VCSFilesystemInterceptor.beforeCreate(VCSFilesystemInterceptor.java:282)
	at org.netbeans.modules.versioning.masterfs.FilesystemInterceptor.beforeCreate(FilesystemInterceptor.java:223)
	at org.netbeans.modules.masterfs.ProvidedExtensionsProxy$2.run(ProvidedExtensionsProxy.java:157)
	at org.netbeans.modules.masterfs.ProvidedExtensionsProxy.runCheckCode(ProvidedExtensionsProxy.java:493)
	at org.netbeans.modules.masterfs.ProvidedExtensionsProxy.beforeCreate(ProvidedExtensionsProxy.java:155)
	at org.netbeans.modules.masterfs.filebasedfs.fileobjects.FolderObj.createDataImpl(FolderObj.java:342)
	at org.netbeans.modules.masterfs.filebasedfs.fileobjects.FolderObj$1.call(FolderObj.java:315)
	at org.netbeans.modules.masterfs.filebasedfs.fileobjects.FolderObj$1.call(FolderObj.java:313)
	at org.netbeans.modules.masterfs.filebasedfs.FileBasedFileSystem.runAsInconsistent(FileBasedFileSystem.java:120)
	at org.netbeans.modules.masterfs.filebasedfs.fileobjects.FolderObj.createData(FolderObj.java:318)
	at org.openide.filesystems.FileUtil.createData(FileUtil.java:799)
	at org.netbeans.spi.project.support.ant.ProjectGenerator$1.run(ProjectGenerator.java:141)
	at org.netbeans.spi.project.support.ant.ProjectGenerator$1.run(ProjectGenerator.java:122)
	at org.openide.util.Mutex.writeAccess(Mutex.java:443)
	at org.netbeans.spi.project.support.ant.ProjectGenerator.createProject0(ProjectGenerator.java:122)
	at org.netbeans.spi.project.support.ant.ProjectGenerator.createProject(ProjectGenerator.java:103)
	at org.netbeans.modules.php.project.util.PhpProjectGenerator.createProject0(PhpProjectGenerator.java:167)
	at org.netbeans.modules.php.project.util.PhpProjectGenerator.createProject(PhpProjectGenerator.java:121)
	at org.netbeans.modules.php.project.ui.wizards.NewPhpProjectWizardIterator.instantiate(NewPhpProjectWizardIterator.java:257)
	at org.openide.loaders.TemplateWizard$InstantiatingIteratorBridge.instantiate(TemplateWizard.java:1044)
	at org.openide.loaders.TemplateWizard.handleInstantiate(TemplateWizard.java:605)
	at org.openide.loaders.TemplateWizard.instantiateNewObjects(TemplateWizard.java:439)
	at org.openide.loaders.TemplateWizardIterImpl.instantiate(TemplateWizardIterImpl.java:253)
	at org.openide.loaders.TemplateWizardIteratorWrapper$ProgressInstantiatingIterator.instantiate(TemplateWizardIteratorWrapper.java:180)
	at org.openide.WizardDescriptor.callInstantiateOpen(WizardDescriptor.java:1626)
	at org.openide.WizardDescriptor.callInstantiate(WizardDescriptor.java:1570)
	at org.openide.WizardDescriptor.access$2300(WizardDescriptor.java:92)
	at org.openide.WizardDescriptor$Listener$2$1.run(WizardDescriptor.java:2257)
	at org.openide.util.RequestProcessor$Task.run(RequestProcessor.java:1423)
[catch] at org.openide.util.RequestProcessor$Processor.run(RequestProcessor.java:2033)



Team -> Git -> Commit and returns

java.lang.NoClassDefFoundError: Could not initialize class org.eclipse.jgit.util.FS
	at org.eclipse.jgit.lib.BaseRepositoryBuilder.setupWorkTree(BaseRepositoryBuilder.java:620)
	at org.eclipse.jgit.lib.BaseRepositoryBuilder.setup(BaseRepositoryBuilder.java:556)
	at org.eclipse.jgit.storage.file.FileRepositoryBuilder.build(FileRepositoryBuilder.java:92)
	at org.netbeans.libs.git.jgit.Utils.getRepositoryForWorkingDir(Utils.java:102)
	at org.netbeans.libs.git.jgit.JGitRepository.getRepository(JGitRepository.java:76)
	at org.netbeans.libs.git.jgit.JGitRepository.increaseClientUsage(JGitRepository.java:64)
	at org.netbeans.libs.git.GitClient.<init>(GitClient.java:312)
	at org.netbeans.libs.git.GitRepository.createClient(GitRepository.java:212)
	at org.netbeans.libs.git.GitRepository.createClient(GitRepository.java:164)
	at org.netbeans.modules.git.client.GitClient.<init>(GitClient.java:213)
	at org.netbeans.modules.git.Git.getClient(Git.java:216)
	at org.netbeans.modules.git.Git.getClient(Git.java:212)
	at org.netbeans.modules.git.Git.getClient(Git.java:208)
	at org.netbeans.modules.git.FileStatusCache.refreshAllRoots(FileStatusCache.java:231)
	at org.netbeans.modules.git.FileStatusCache.refreshAllRoots(FileStatusCache.java:192)
	at org.netbeans.modules.git.FilesystemInterceptor$RefreshTask.run(FilesystemInterceptor.java:676)
	at org.openide.util.RequestProcessor$Task.run(RequestProcessor.java:1423)
[catch] at org.openide.util.RequestProcessor$Processor.run(RequestProcessor.java:2033)



*** Note that everytime, the actions is not performed and the popup wizard stays open without any buttons available. Same errors occures with the following version (Maybe with different trace but with same main error "java.lang.NoClassDefFoundError: Could not initialize class org.eclipse.jgit.*")


Tested with:

Product Version: NetBeans IDE 8.0.2 (Build 201411181905)
Updates: Updates available to version NetBeans 8.0.2 Patch 2
Java: 1.8.0_45; Java HotSpot(TM) 64-Bit Server VM 25.45-b02
Runtime: Java(TM) SE Runtime Environment 1.8.0_45-b14
System: Windows 7 version 6.1 running on amd64; UTF-8; en_US (nb)
&
Product Version: NetBeans IDE 8.0.2 (Build 201411181905)
Updates: Updates available to version NetBeans 8.0.2 Patch 2
Java: 1.8.0_60; Java HotSpot(TM) 64-Bit Server VM 25.60-b23
Runtime: Java(TM) SE Runtime Environment 1.8.0_60-b27
System: Windows 7 version 6.1 running on amd64; UTF-8; en_US (nb)
&
Product Version: NetBeans IDE Dev (Build 201510140002)
Java: 1.8.0_60; Java HotSpot(TM) 64-Bit Server VM 25.60-b23
Runtime: Java(TM) SE Runtime Environment 1.8.0_60-b27
System: Windows 7 version 6.1 running on amd64; Cp1252; en_US (nb)
&
Product Version: NetBeans IDE 8.1 RC2 (Build 201510122201)
Java: 1.8.0_60; Java HotSpot(TM) 64-Bit Server VM 25.60-b23
Runtime: Java(TM) SE Runtime Environment 1.8.0_60-b27
System: Windows 7 version 6.1 running on amd64; Cp1252; en_US (nb)

Additional info:
- Tested both with and without admin access (Run as administrator)
- Using some portable (self-extracted) JDK, so no registry of environment path applies on the system.
  (Manually unpacked with "unpack200.exe" for "rt")
- Using portable (zip versions) of Netbeans-PHP
- Tested both with "netbeans64.exe" and "netbeans.exe"
  Tested with both relative and absolute JDK home path in "etc/netbeans.conf" -> 
  netbeans_jdkhome="../runtimes/java"
  netbeans_jdkhome="C:\\runtimes\\java"
- Tested with different git repositories
- No PATH nor CLASSPATH or any other environment variables or registries are used
  We insinuate that "netbeans_jdkhome" is used to do the whole work properly
- PortableGit is installed and in user's PATH (mentioned in case of possible conflict)
- Tested on two different PCs with different profiles
- I used to make it work earlier (few months ago) but I ain't sure how I made it but I remember having applied updates between those times.

Is it possible that the latest version of JGit distributed with all Netbeans-PHP bundles is not properly compatible? (Just a thought)

Thank you.
Comment 1 Ondrej Vrabec 2015-10-15 17:33:58 UTC 
Please attach full IDE log with the error.
Comment 2 danny_b 2015-10-15 17:45:57 UTC 
Created attachment 156751 [details]
Error while inserting a new Repository URL with Team -> Git -> Clone...
Comment 3 Ondrej Vrabec 2015-10-16 06:25:18 UTC 
(In reply to danny_b from comment #0)
> Is it possible that the latest version of JGit distributed with all
> Netbeans-PHP bundles is not properly compatible? (Just a thought)
No way. JGit works fine for almost all times with NetBeans. Your problem originates at:

java.security.NoSuchAlgorithmException: SHA-1 MessageDigest not available
	at sun.security.jca.GetInstance.getInstance(GetInstance.java:159)

Seems your Java installation does not contain/support a basic message-digest algorithm. Can you please reinstall JDK?
Comment 4 danny_b 2015-10-16 13:21:00 UTC 
Indeed, I was not aware that "jre\lib\" was containing more "pack" file then only the "rt.pack".
I've unpacked them all and it seems to work properly now.

Sorry and thank you for the notice.