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For BPEL project to reference XSD, WSDL files belong to IEP project, there IEP project have to also declare its source root as of XML source type: sourcesHelper.addTypedSourceRoot(..., ProjectConstants.SOURCES_TYPE_XML,...); Where ProjectConstants.SOURCE_TYPE_XML is defined in xml/catalogsupport module.
Also, since the SEDeployment.jar is a JAR, IEP project need to define *additional* artifact like: helper.createSimpleAntArtifact(IcanproConstants.ARTIFACT_TYPE_JAR,...) This is needed so referencing project (e.g. BPEL or XSLT project types), to generate correct ant target parts for copying the XML reference closure.
merged the changes as said