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See issue 74113. There is one outstanding problem - "Another unexpected behavior: Say I have a dbschema file in mypackage and right click on that package to invoke this wizard. The first found schema in META-INF is the default, not the one in my package."
Considering that dbschema files are usually in src/META-INF or src/conf and not in packages, I think this it is unlikely that this issue affects any user.
I thought it was a bit more common and the fix was easy: Checking in src/org/netbeans/modules/j2ee/persistence/wizard/fromdb/DatabaseTablesPanel.java; /cvs/j2ee/persistence/src/org/netbeans/modules/j2ee/persistence/wizard/fromdb/Attic/DatabaseTablesPanel.java,v <-- DatabaseTablesPanel.java new revision: 1.1.2.36; previous revision: 1.1.2.35 done
fixed