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After creating an action in a module and then Safely Deleting it, you are left with an empty subfolder of Actions. All <folder>s newly emptied by a refactoring operation should probably be deleted from the layer. Might rather be handled by WritableXMLFileSystem, in which case reassign to me in project subcomponent.
/cvs/apisupport/refactoring/src/org/netbeans/modules/apisupport/refactoring/NbSafeDeleteRefactoringPlugin.java,v new revision: 1.10; previous revision: 1.9 Somehow fixed.