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Initial state: ==================== There is a file a.php wich references mehtos ->oldMethodName(); a.php has "windows-style line endings" there is another file b.php that defines a class having this method oldMethodName(). Action ==================== when browsing b.php we decide to refactor and rename a method to newMethodName(); it correctly changes the code calling this method in a.php, Problem ==================== BUT! when auto-saving the file with this change it converts its line endings into Unix-style which is not what anyone would expect.