I will attach the web module after filing the bug. 

I have a valid web module which I use as a test case for 
the monitor. When I select WEB-INF -> Execute (Force 
Reload) the application does not get executed because 
compilation files.

I think the reason it does this is that it tries to 
compile the whole application and runs into the known 
problem of compile-all failing if you have more than one 
JSP with the same name (why did this not get fixed?).  

Here are the exceptions:

index$jsp.java [9:1] duplicate class: 
org.apache.jsp.index$jsp
public class index$jsp extends HttpJspBase {
       ^
index$jsp.java [17:1] modifier private static not allowed 
here
    private static boolean _jspx_inited = false;
                           ^
index$jsp.java [9:1] org.apache.jsp.index$jsp should be 
declared abstract; it does not define _jspService() in 
org.apache.jasper.runtime.HttpJspBase
public class index$jsp extends HttpJspBase {
       ^
3 errors
Errors compiling Web module compiling..

This needs to be fixed for the Netbeans 3.4 release, 
because this means that users probably can't run existing 
webapps (it is highly likely that there is more than one 
index.jsp for example). They also may not be able to 
execute web applications that they build with the IDE.

This is close to P1. I'm filing it as a P2 because there 
is a workaround, which is to compile each directory with a 
file with a name that is used somewhere else separately. 
However, this workaround is unlikely to be obvious to most 
users. 

QA, please add a test case with a module with multiple 
JSPs of the same name.