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Product Version = NetBeans IDE 6.9 (Build 201006101454) Operating System = Mac OS X version 10.5.8 running on x86_64 Java; VM; Vendor = 1.6.0_15 Runtime = Java HotSpot(TM) 64-Bit Server VM 14.1-b02-92 Entering into debug window and stopping at breakpoints not occurring when Debug>Debug Project is selected. NetBeans behaves the same as running a project from IDE, i.e., does not stop at cursor or breakpoints.
Can you please provide some steps to reproduce? E.g. provide a sample project where you encounter such behavior?