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If I configure checkstyle via <plugin> <groupId>org.apache.maven.plugins</groupId> <artifactId>maven-checkstyle-plugin</artifactId> <configuration> <configLocation>checkstyle.5.0.xml</configLocation> </configuration> </plugin> Nb is also using the checkstyle configuration set in the global configuration <home>/.netbeans\6.9\config\Preferences\org\nbheaven\sqe\codedefects\checkstyle.xml thus in the java code nb would show 2 checkstyle entries eg linelength longer then 120 and linelength longer than 80. However if i simply remove the Config File in the Global Configuration it would automatically write the netbeans install directory (E:/Programme/Softwareentwicklung/NetBeans 6.9/NetBeans 6.9) into this field. If I change the java file and checkstyle checks again I'd get an error: java.io.FileNotFoundException: E:/Programme/Softwareentwicklung/NetBeans 6.9/NetBeans 6.9 Nb should only use one checkstyle configuration, usually the one used via the project properties.