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It would be useful if the Build Output Window echoed the working directory in which make is started as it starts. This will help sort things out in remote scenarios espceially during debugging because the working directory a compiler runs in is recorded in debugging information and becomes part of the pathname of files.
What tool collection do you use? Is your project from existing code?
This RFE is independent of toolchain or kind of project. Note, I'm only requesting the working directory from which make is started. Individual compiler stuff can be deduced form that.