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Not sure if this is a VCS or a Maven issue. If you have sub projects (maven) the vcs operations just use the specific sub project. Since they are all in one repository, it would make sense to commit all of them at once. Example: - Parent Project (POM) -- Webproject (WAR) -- Backend (JAR) I would expect that the Parent Project does commit its sub projects as well. Right now there is no possibility to commit everything at once if code changes happened accross sub modules.
Projects and Files view apply only on projects, all together can be committed from the Favorites view. See issue 159543. *** This issue has been marked as a duplicate of 159543 ***