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When the project is being opened, clearcase attempts to check way too many files if they live inside a clearcase root directory (e.g. files in c:\Program Files\NetBeans, c:\Documents and Settings\profilename, etc which are most definitely not versioned (and it's unlikely that anyone would be versioning their program files or profile dir anyway). A potential workaround based on (what I think is) a common practice is to specify a root directory (or directories) where clearcase content lives (e.g. snapshots directory, where all views are created). Thus, the plugin will never have to check if it is versioning directories that are outside of those explicitly specified directories. Below are a few lines from my IDE log ( I've added a few debug statements to show me the commands being run) : About to run Clearcase command : ls -long -directory C:\Documents and Settings\akochnev\.netbeans\6.7rc1\var\cache\index\s680\ruby\9 About to run Clearcase command : ls -long -directory C:\Documents and Settings\akochnev\.netbeans\6.7rc1\var\cache\index\s680 About to run Clearcase command : ls -long -directory C:\Documents and Settings\akochnev\.netbeans\6.7rc1\var\cache\index About to run Clearcase command : ls -long -directory D:\ProgramFiles\NetBeans6.7RC1\ruby2\jruby-1.2.0\lib\ruby\gems\1.8\gems\activerecord-jdbc-adapter-0.9.1\lib\jdbc_adapter About to run Clearcase command : ls -long -directory D:\ProgramFiles\NetBeans6.7RC1\ruby2\jruby-1.2.0\lib\ruby\gems\1.8\gems\activerecord-jdbc-adapter-0.9.1\lib\active_record About to run Clearcase command : ls -long -directory D:\ProgramFiles\NetBeans6.7RC1\ruby2\jruby-1.2.0\lib\ruby\gems\1.8\gems\activerecord-jdbc-adapter-0.9.1\lib\active_record\connection_adapters About to run Clearcase command : ls -long -directory C:\Documents and Settings\akochnev\.netbeans\6.7rc1\var\cache\index\s681 About to run Clearcase command : ls -long -directory C:\Documents and Settings\akochnev\.netbeans\6.7rc1\var\cache\index\s681\org-netbeans-modules-jumpto-file-FileIndexer About to run Clearcase command : ls -long -directory C:\Documents and Settings\akochnev\.netbeans\6.7rc1\var\cache\index\s681\org-netbeans-modules-jumpto-file-FileIndexer\1 About to run Clearcase command : ls -long -directory C:\Documents and Settings\akochnev\.netbeans\6.7rc1\var\cache\index\s681 About to run Clearcase command : ls -long -directory C:\Documents and Settings\akochnev\.netbeans\6.7rc1\var\cache\index\s681\TaskListIndexer About to run Clearcase command : ls -long -directory C:\Documents and Settings\akochnev\.netbeans\6.7rc1\var\cache\index\s681 About to run Clearcase command : ls -long -directory C:\Documents and Settings\akochnev\.netbeans\6.7rc1\var\cache\index\s681\ruby About to run Clearcase command : ls -long -directory C:\Documents and Settings\akochnev\.netbeans\6.7rc1\var\cache\index\s681\ruby\9 About to run Clearcase command : ls -long -directory C:\Documents and Settings\akochnev\.netbeans\6.7rc1\var\cache\index\s681 About to run Clearcase command : ls -long -directory C:\Documents and Settings\akochnev\.netbeans\6.7rc1\var\cache\index About to run Clearcase command : ls -long -directory D:\ProgramFiles\NetBeans6.7RC1\ruby2\jruby-1.2.0\lib\ruby\gems\1.8\gems\actionpack-2.3.2\lib About to run Clearcase command : ls -long -directory D:\ProgramFiles\NetBeans6.7RC1\ruby2\jruby-1.2.0\lib\ruby\gems\1.8\gems\actionpack-2.3.2\lib\action_view About to run Clearcase command : ls -long -directory D:\ProgramFiles\NetBeans6.7RC1\ruby2\jruby-1.2.0\lib\ruby\gems\1.8\gems\actionpack-2.3.2\lib\action_view\helpers