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See the attached project. The input message is declared as an element, which has three sub-elements in a sequence: a, b, a. Note that the first and the last elements have the same name. That is on purpose and perfectly legal from the schema POV. If I look at this message in BPEL mapper I can see only two of these: a, b.
Created attachment 77551 [details] Sample project
After discussion with Kirill and Nikita, we agree that nice and reasonable workaround exists: user should set predicate to specify which "a" element is used.