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For a normal Java-Project there is the Panel "Properties->Build->Documenting". In this Panel, you can select what will be generated by javadoc. This Panel is not available under "Properties->Build" in Modules for the Netbeans Rich-Client-Platform.
Created attachment 65361 [details] Properties Panel for normal Projects
Created attachment 65364 [details] Properties Panel for Netbeans RCP Module Projects
In fact the build harness does not support all these options. Unclear if we want to bother adding them. You can of course override the 'javadoc' target in your build.xml if you want to customize Javadoc generation.