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Product Version: NetBeans IDE Dev (Build 20080525200304) Java: 1.6.0_10-beta; Java HotSpot(TM) Client VM 11.0-b11 System: Linux version 2.6.22-14-generic running on i386; UTF-8; en_US (nb) The Include/Exclude file dialog is not very user friendly. Especially when there are lots of files and deep package structure is hard to review what files are included and which are not. Some tree structure with checkboxes (like refactoring preview) would be IMO more transparent.