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1. Create newLoanApplication schema. 2. Create newPurchaseOrder schema. 3. Refer from newLoanApplication schema to newPurchaseOrder schema. 4. Move newLoanApplication schema to Test Packages - warning appears. 5. Click "Show Usages..." in the warning dialog. Result: usages of newLoanApplication appears. They're not that what user needs. IDE should detect that the problem is created by usage of newPurchaseOrder schema and display usages for it.
This old bug may not be relevant anymore. If you can still reproduce it in 8.2 development builds please reopen this issue. Thanks for your cooperation, NetBeans IDE 8.2 Release Boss