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As Dudley suggested in the http://ruby.netbeans.org/servlets/ReadMsg?list=dev&msgNo=718 thread.
I've removed the template. Was really useless. http://hg.netbeans.org/main/rev/bc83ca805950
Actually this was just partly fixed. I've removed the Rakefile from preferred templates. But removed it completely from New File wizard now. So unfortunately fixed in after-6.1 release. Changeset: a82be3985123