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Profiler overried build.xml of j2se project. It's better to use new build extension API: http://wiki.netbeans.org/wiki/view/BuildScriptExtensibility
Thanks for the suggestion. Unfortunately, this is more a RFE which won't be implemented for 6.0. For future releases we are rather thinking about providing profiling support in build-impl by default the same way as for debugging - which makes sense since the profiler is now an integral part of the IDE. Leaving this issue open as an alternative option.
Milestone cleanup: future->next