Caused: java.io.FileNotFoundException: /opt/nbd/sges-v3/glassfish/domains/domain1/config/server.policy (Permission denied)
   at java.io.FileInputStream.open(FileInputStream.java:0)
   at java.io.FileInputStream.<init>(FileInputStream.java:106)
   at org.netbeans.modules.masterfs.filebasedfs.fileobjects.FileObj$2.<init>(FileObj.java:163)
Caused: java.io.FileNotFoundException: /opt/nbd/sges-v3/glassfish/domains/domain1/config/server.policy (Permission denied)
   at org.netbeans.modules.masterfs.filebasedfs.fileobjects.FileObj.getInputStream(FileObj.java:180)
   at org.openide.filesystems.FileUtil.copyFileImpl(FileUtil.java:715)
   at org.openide.filesystems.FileObject.copy(FileObject.java:128)
   at org.openide.filesystems.FileUtil.copyFile(FileUtil.java:768)
   at org.netbeans.modules.glassfish.spi.Utils.doCopy(Utils.java:371)
   at org.netbeans.modules.glassfish.spi.Utils.doCopy(Utils.java:365)
   at org.netbeans.modules.glassfish.spi.Utils.doCopy(Utils.java:365)
   at org.netbeans.modules.glassfish.common.CommonServerSupport.getDomainsRoot(CommonServerSupport.java:262)
   at org.netbeans.modules.glassfish.common.CommonServerSupport.getInstanceProperties(CommonServerSupport.java:307)
   at org.netbeans.modules.glassfish.javaee.JavaEEServerModuleFactory.createModule(JavaEEServerModuleFactory.java:138)
   at org.netbeans.modules.glassfish.common.GlassfishInstance.updateFactories(GlassfishInstance.java:185)
   at org.netbeans.modules.glassfish.common.GlassfishInstance.updateModuleSupport(GlassfishInstance.java:199)
   at org.netbeans.modules.glassfish.common.GlassfishInstanceProvider.loadServerInstances(GlassfishInstanceProvider.java:478)
   at org.netbeans.modules.glassfish.common.GlassfishInstanceProvider.init(GlassfishInstanceProvider.java:435)
   at org.netbeans.modules.glassfish.common.GlassfishInstanceProvider.getEe6(GlassfishInstanceProvider.java:130)
   at org.netbeans.modules.glassfish.spi.ServerUtilities.getEe6Utilities(ServerUtilities.java:91)
   at org.netbeans.modules.glassfish.javaee.Hk2OptionalFactory.createEe6(Hk2OptionalFactory.java:98)
   at sun.reflect.NativeMethodAccessorImpl.invoke0(NativeMethodAccessorImpl.java:0)
   at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
   at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
   at java.lang.reflect.Method.invoke(Method.java:597)
   at org.netbeans.core.startup.layers.BinaryFS$AttrImpl$MethodAndParams.invoke(BinaryFS.java:604)
   at org.netbeans.core.startup.layers.BinaryFS$AttrImpl.getValue(BinaryFS.java:537)
   at org.netbeans.core.startup.layers.BinaryFS$BFSBase.getAttribute(BinaryFS.java:383)
   at org.openide.filesystems.MultiFileObject.getAttribute(MultiFileObject.java:900)
   at org.openide.filesystems.MultiFileObject.getAttribute(MultiFileObject.java:838)
   at org.openide.filesystems.MultiFileObject.getAttribute(MultiFileObject.java:896)
   at org.openide.filesystems.MultiFileObject.getAttribute(MultiFileObject.java:838)
   at org.openide.filesystems.MultiFileObject.getAttribute(MultiFileObject.java:765)
   at org.openide.loaders.InstanceDataObject$Ser.instanceCreate(InstanceDataObject.java:1370)
   at org.openide.loaders.InstanceDataObject.instanceCreate(InstanceDataObject.java:818)
   at org.openide.loaders.FolderLookup$ICItem.getInstance(FolderLookup.java:584)
   at org.openide.util.lookup.AbstractLookup.lookup(AbstractLookup.java:409)
   at org.openide.util.lookup.ProxyLookup.lookup(ProxyLookup.java:205)
   at org.openide.util.lookup.ProxyLookup.lookup(ProxyLookup.java:205)
   at org.netbeans.modules.j2ee.deployment.impl.Server.getOptionalFactory(Server.java:248)
   at org.netbeans.modules.j2ee.deployment.impl.ServerRegistry.init(ServerRegistry.java:144)
   at org.netbeans.modules.j2ee.deployment.impl.ServerRegistry.instancesMap(ServerRegistry.java:168)
   at org.netbeans.modules.j2ee.deployment.impl.ServerRegistry.getInstanceURLs(ServerRegistry.java:271)
   at org.netbeans.modules.j2ee.deployment.plugins.api.InstanceProperties.getInstanceList(InstanceProperties.java:290)
   at org.netbeans.modules.j2ee.deployment.devmodules.api.Deployment.getServerInstanceIDs(Deployment.java:299)
   at org.netbeans.modules.j2ee.deployment.impl.query.J2eePlatformSourceForBinaryQuery.findSourceRoots2(J2eePlatformSourceForBinaryQuery.java:91)
   at org.netbeans.api.java.queries.SourceForBinaryQuery.findSourceRoots2(SourceForBinaryQuery.java:118)
   at org.netbeans.modules.parsing.impl.indexing.PathRegistry.createResources(PathRegistry.java:611)
   at org.netbeans.modules.parsing.impl.indexing.PathRegistry.getSources(PathRegistry.java:227)
   at org.netbeans.modules.parsing.impl.indexing.RepositoryUpdater$RootsWork.getDone(RepositoryUpdater.java:2741)
   at org.netbeans.modules.parsing.impl.indexing.RepositoryUpdater$InitialRootsWork.getDone(RepositoryUpdater.java:3259)
   at org.netbeans.modules.parsing.impl.indexing.RepositoryUpdater$Work.doTheWork(RepositoryUpdater.java:1981)
   at org.netbeans.modules.parsing.impl.indexing.RepositoryUpdater$Task._run(RepositoryUpdater.java:3567)
   at org.netbeans.modules.parsing.impl.indexing.RepositoryUpdater$Task.run(RepositoryUpdater.java:3509)
   at org.netbeans.modules.parsing.impl.TaskProcessor$CompilationJob.run(TaskProcessor.java:575)
   at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441)
   at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
   at java.util.concurrent.FutureTask.run(FutureTask.java:138)
   at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
   at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
   at java.lang.Thread.run(Thread.java:619)