Full thread dump Java HotSpot(TM) Client VM (1.5.0_11-b03 mixed mode, sharing):

"Inactive RequestProcessor thread [Was:Default RequestProcessor/org.netbeans.modules.editor.errorstripe.AnnotationView$RepaintTask]" daemon prio=1 tid=0xa8b02b48 nid=0x3683 in Object.wait() [0xa93ad000..0xa93ad1b0]
        at java.lang.Object.wait(Native Method)
        - waiting on <0x80c9d088> (a java.lang.Object)
        at org.openide.util.RequestProcessor$Processor.run(RequestProcessor.java:916)
        - locked <0x80c9d088> (a java.lang.Object)

"Inactive RequestProcessor thread [Was:TimedSoftReference/org.openide.util.TimedSoftReference]" daemon prio=1 tid=0xa8b00470 nid=0x367f in Object.wait() [0xa9bd8000..0xa9bd8130]
        at java.lang.Object.wait(Native Method)
        - waiting on <0x80c20638> (a java.lang.Object)
        at org.openide.util.RequestProcessor$Processor.run(RequestProcessor.java:916)
        - locked <0x80c20638> (a java.lang.Object)

"Inactive RequestProcessor thread [Was:Logging Flush/org.netbeans.core.startup.TopLogging$NonClose]" daemon prio=1 tid=0x08f0b098 nid=0x367e in Object.wait() [0xa9cd9000..0xa9cda0b0]
        at java.lang.Object.wait(Native Method)
        - waiting on <0x80c206b0> (a java.lang.Object)
        at org.openide.util.RequestProcessor$Processor.run(RequestProcessor.java:916)
        - locked <0x80c206b0> (a java.lang.Object)

"Timer-2" daemon prio=1 tid=0x090746a0 nid=0x367d in Object.wait() [0xb13c7000..0xb13c8030]
        at java.lang.Object.wait(Native Method)
        - waiting on <0x80bb0498> (a java.util.TaskQueue)
        at java.util.TimerThread.mainLoop(Timer.java:509)
        - locked <0x80bb0498> (a java.util.TaskQueue)
        at java.util.TimerThread.run(Timer.java:462)

"pool-1-thread-1" prio=1 tid=0x08ca57d8 nid=0x367c waiting on condition [0xa9c58000..0xa9c58fb0]
        at sun.misc.Unsafe.park(Native Method)
        at java.util.concurrent.locks.LockSupport.park(LockSupport.java:118)
        at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:1767)
        at java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:359)
        at java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:470)
        at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:674)
        at java.lang.Thread.run(Thread.java:595)

"Java Node Badge Processor" daemon prio=1 tid=0x087ce230 nid=0x3671 waiting on condition [0xa9b2e000..0xa9b2f1b0]
        at sun.misc.Unsafe.park(Native Method)
        at java.util.concurrent.locks.LockSupport.parkNanos(LockSupport.java:146)
        at java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.awaitNanos(AbstractQueuedSynchronizer.java:1803)
        at java.util.concurrent.LinkedBlockingQueue.poll(LinkedBlockingQueue.java:396)
        at org.netbeans.modules.java.JavaNode$2.run(JavaNode.java:255)
        at org.openide.util.RequestProcessor$Task.run(RequestProcessor.java:541)
        at org.openide.util.RequestProcessor$Processor.run(RequestProcessor.java:963)

"Java Source Worker Thread" prio=1 tid=0x08559f60 nid=0x366f runnable [0xa942d000..0xa942e0b0]
        at java.nio.Buffer.<init>(Buffer.java:176)
        at java.nio.ByteBuffer.<init>(ByteBuffer.java:259)
        at java.nio.HeapByteBuffer.<init>(HeapByteBuffer.java:52)
        at java.nio.ByteBuffer.wrap(ByteBuffer.java:350)
        at java.nio.ByteBuffer.wrap(ByteBuffer.java:373)
        at java.lang.StringCoding$CharsetSE.encode(StringCoding.java:339)
        at java.lang.StringCoding.encode(StringCoding.java:378)
        at java.lang.String.getBytes(String.java:812)
        at java.io.UnixFileSystem.list(Native Method)
        at java.io.File.list(File.java:937)
        at java.io.File.list(File.java:968)
        at org.apache.lucene.store.FSDirectory.list(FSDirectory.java:314)
        at org.apache.lucene.index.SegmentInfos.getCurrentSegmentGeneration(SegmentInfos.java:114)
        at org.apache.lucene.index.IndexReader.indexExists(IndexReader.java:353)
        at org.netbeans.modules.java.source.usages.LuceneIndex.isValid(LuceneIndex.java:594)
        at org.netbeans.modules.java.source.usages.BinaryAnalyser.delete(BinaryAnalyser.java:276)
        at org.netbeans.modules.java.source.usages.BinaryAnalyser.analyse(BinaryAnalyser.java:300)
        at org.netbeans.modules.java.source.usages.BinaryAnalyser.analyseArchive(BinaryAnalyser.java:234)
        at org.netbeans.modules.java.source.usages.BinaryAnalyser.access$200(BinaryAnalyser.java:77)
        at org.netbeans.modules.java.source.usages.BinaryAnalyser$1.run(BinaryAnalyser.java:120)
        at org.netbeans.modules.java.source.usages.BinaryAnalyser$1.run(BinaryAnalyser.java:100)
        at org.netbeans.modules.java.source.usages.ClassIndexManager.writeLock(ClassIndexManager.java:49)
        at org.netbeans.modules.java.source.usages.BinaryAnalyser.analyse(BinaryAnalyser.java:99)
        at org.netbeans.modules.java.source.usages.RepositoryUpdater$CompileWorker.scanRoots(RepositoryUpdater.java:890)
        at org.netbeans.modules.java.source.usages.RepositoryUpdater$CompileWorker.access$1500(RepositoryUpdater.java:617)
        at org.netbeans.modules.java.source.usages.RepositoryUpdater$CompileWorker$1.run(RepositoryUpdater.java:708)
        at org.netbeans.modules.java.source.usages.RepositoryUpdater$CompileWorker$1.run(RepositoryUpdater.java:645)
        at org.netbeans.modules.java.source.usages.ClassIndexManager.writeLock(ClassIndexManager.java:49)
        at org.netbeans.modules.java.source.usages.RepositoryUpdater$CompileWorker.run(RepositoryUpdater.java:642)
        at org.netbeans.modules.java.source.usages.RepositoryUpdater$CompileWorker.run(RepositoryUpdater.java:617)
        at org.netbeans.api.java.source.JavaSource$CompilationJob.run(JavaSource.java:1110)
        at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:417)
        at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:269)
        at java.util.concurrent.FutureTask.run(FutureTask.java:123)
        at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:650)
        at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:675)
        at java.lang.Thread.run(Thread.java:595)

"Timer-1" prio=1 tid=0x0855a3a8 nid=0x366e in Object.wait() [0xa94ae000..0xa94af030]
        at java.lang.Object.wait(Native Method)
        - waiting on <0x7fd19ab8> (a java.util.TaskQueue)
        at java.lang.Object.wait(Object.java:474)
        at java.util.TimerThread.mainLoop(Timer.java:483)
        - locked <0x7fd19ab8> (a java.util.TaskQueue)
        at java.util.TimerThread.run(Timer.java:462)

"DestroyJavaVM" prio=1 tid=0x0805dc58 nid=0x3643 waiting on condition [0x00000000..0xbfdabec0]

"AWT-EventQueue-1" prio=1 tid=0x08785990 nid=0x3666 in Object.wait() [0xb0ebd000..0xb0ebe0b0]
        at java.lang.Object.wait(Native Method)
        - waiting on <0x7fd1a4b8> (a org.netbeans.modules.java.source.usages.RepositoryUpdater)
        at java.lang.Object.wait(Object.java:474)
        at org.netbeans.modules.java.source.usages.RepositoryUpdater.waitScanFinished(RepositoryUpdater.java:205)
        - locked <0x7fd1a4b8> (a org.netbeans.modules.java.source.usages.RepositoryUpdater)
        at org.netbeans.api.java.source.SourceUtils.waitScanFinished(SourceUtils.java:638)
        at org.netbeans.modules.profiler.utils.SourceUtils.isInstanceOf(SourceUtils.java:357)
        at org.netbeans.modules.profiler.utils.SourceUtils.isTest(SourceUtils.java:190)
        at org.netbeans.modules.profiler.utils.SourceUtils.isRunnable(SourceUtils.java:198)
        at org.netbeans.modules.profiler.j2se.J2SEProjectTypeProfiler.isFileObjectSupported(J2SEProjectTypeProfiler.java:102)
        at org.netbeans.modules.profiler.actions.AntActions$2.enable(AntActions.java:134)
        at org.netbeans.modules.profiler.actions.FileSensitiveAction.refresh(FileSensitiveAction.java:40)
        at org.netbeans.modules.profiler.actions.ProjectSensitiveAction$1.run(ProjectSensitiveAction.java:67)
        at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209)
        at java.awt.EventQueue.dispatchEvent(EventQueue.java:461)
        at java.awt.EventDispatchThread.pumpOneEventForHierarchy(EventDispatchThread.java:242)
        at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:163)
        at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:157)
        at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:149)
        at java.awt.EventDispatchThread.run(EventDispatchThread.java:110)

"Memory results batch processor" prio=1 tid=0x085110c8 nid=0x3665 in Object.wait() [0xa9d5a000..0xa9d5b030]
        at java.lang.Object.wait(Native Method)
        - waiting on <0x7f9f9bf0> (a java.lang.Object)
        at com.sun.tools.profiler.results.ProfilingResultsDispatcher$QueueProcessor.processQueue(ProfilingResultsDispatcher.java:89)
        - locked <0x7f9f9bf0> (a java.lang.Object)
        at com.sun.tools.profiler.results.ProfilingResultsDispatcher$QueueProcessor.run(ProfilingResultsDispatcher.java:56)
        at java.lang.Thread.run(Thread.java:595)

"CPU results batch processor" prio=1 tid=0x085ed920 nid=0x3664 in Object.wait() [0xa9ddb000..0xa9ddbfb0]
        at java.lang.Object.wait(Native Method)
        - waiting on <0x7f9f9c78> (a java.lang.Object)
        at com.sun.tools.profiler.results.ProfilingResultsDispatcher$QueueProcessor.processQueue(ProfilingResultsDispatcher.java:89)
        - locked <0x7f9f9c78> (a java.lang.Object)
        at com.sun.tools.profiler.results.ProfilingResultsDispatcher$QueueProcessor.run(ProfilingResultsDispatcher.java:56)
        at java.lang.Thread.run(Thread.java:595)

"*** JFluid Separate Command Execution Thread" daemon prio=1 tid=0x085ede38 nid=0x3663 in Object.wait() [0xa9e5c000..0xa9e5cf30]
        at java.lang.Object.wait(Native Method)
        - waiting on <0x7f9f9d00> (a java.lang.Object)
        at java.lang.Object.wait(Object.java:474)
        at com.sun.tools.profiler.ProfilerClient$SeparateCmdExecutionThread.run(ProfilerClient.java:1679)
        - locked <0x7f9f9d00> (a java.lang.Object)

"Thread-2" daemon prio=1 tid=0x082b7290 nid=0x3661 in Object.wait() [0xb0ac5000..0xb0ac5e30]
        at java.lang.Object.wait(Native Method)
        - waiting on <0x7f9a0b90> (a java.util.LinkedList)
        at java.lang.Object.wait(Object.java:474)
        at java.util.prefs.AbstractPreferences$EventDispatchThread.run(AbstractPreferences.java:1456)
        - locked <0x7f9a0b90> (a java.util.LinkedList)

"Inactive RequestProcessor thread [Was:TimedSoftReference/org.openide.util.TimedSoftReference]" daemon prio=1 tid=0x084fb390 nid=0x3660 in Object.wait() [0xb0c56000..0xb0c561b0]
        at java.lang.Object.wait(Native Method)
        - waiting on <0x7f9a0c18> (a java.lang.Object)
        at org.openide.util.RequestProcessor$Processor.run(RequestProcessor.java:916)
        - locked <0x7f9a0c18> (a java.lang.Object)

"TimerQueue" daemon prio=1 tid=0x083eff90 nid=0x3656 in Object.wait() [0xb0e3c000..0xb0e3d0b0]
        at java.lang.Object.wait(Native Method)
        - waiting on <0x7f479bc8> (a javax.swing.TimerQueue)
        at javax.swing.TimerQueue.run(TimerQueue.java:236)
        - locked <0x7f479bc8> (a javax.swing.TimerQueue)
        at java.lang.Thread.run(Thread.java:595)

"AWT-Shutdown" prio=1 tid=0x083cd200 nid=0x3654 in Object.wait() [0xb0f3e000..0xb0f3efb0]
        at java.lang.Object.wait(Native Method)
        - waiting on <0x7f479ce8> (a java.lang.Object)
        at java.lang.Object.wait(Object.java:474)
        at sun.awt.AWTAutoShutdown.run(AWTAutoShutdown.java:259)
        - locked <0x7f479ce8> (a java.lang.Object)
        at java.lang.Thread.run(Thread.java:595)

"AWT-XAWT" daemon prio=1 tid=0x083cccd8 nid=0x3653 runnable [0xb0fbf000..0xb0fbff30]
        at sun.awt.X11.XToolkit.waitForEvents(Native Method)
        at sun.awt.X11.XToolkit.run(XToolkit.java:463)
        at sun.awt.X11.XToolkit.run(XToolkit.java:438)
        at java.lang.Thread.run(Thread.java:595)

"Java2D Disposer" daemon prio=1 tid=0x083a93b0 nid=0x3652 in Object.wait() [0xb105a000..0xb105aeb0]
        at java.lang.Object.wait(Native Method)
        - waiting on <0x7f479e20> (a java.lang.ref.ReferenceQueue$Lock)
        at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:116)
        - locked <0x7f479e20> (a java.lang.ref.ReferenceQueue$Lock)
        at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:132)
        at sun.java2d.Disposer.run(Disposer.java:125)
        at java.lang.Thread.run(Thread.java:595)

"OpenIDE-request-processor-4" daemon prio=1 tid=0x082fb010 nid=0x3650 in Object.wait() [0xb155c000..0xb155d1b0]
        at java.lang.Object.wait(Native Method)
        - waiting on <0x7fd1a4b8> (a org.netbeans.modules.java.source.usages.RepositoryUpdater)
        at java.lang.Object.wait(Object.java:474)
        at org.netbeans.modules.java.source.usages.RepositoryUpdater.waitScanFinished(RepositoryUpdater.java:205)
        - locked <0x7fd1a4b8> (a org.netbeans.modules.java.source.usages.RepositoryUpdater)
        at org.netbeans.api.java.source.SourceUtils.waitScanFinished(SourceUtils.java:638)
        at org.netbeans.modules.java.j2seproject.MainClassUpdater$2.run(MainClassUpdater.java:150)
        at org.openide.util.RequestProcessor$Task.run(RequestProcessor.java:541)
        at org.openide.util.RequestProcessor$Processor.run(RequestProcessor.java:963)

"Timer-0" daemon prio=1 tid=0x08305c78 nid=0x364f in Object.wait() [0xb1448000..0xb1449130]
        at java.lang.Object.wait(Native Method)
        - waiting on <0x7f3df188> (a java.util.TaskQueue)
        at java.util.TimerThread.mainLoop(Timer.java:509)
        - locked <0x7f3df188> (a java.util.TaskQueue)
        at java.util.TimerThread.run(Timer.java:462)

"CLI Requests Server" daemon prio=1 tid=0x08179e38 nid=0x364e runnable [0xb14c9000..0xb14ca0b0]
        at java.net.PlainSocketImpl.socketAccept(Native Method)
        at java.net.PlainSocketImpl.accept(PlainSocketImpl.java:384)
        - locked <0x7f3df220> (a java.net.SocksSocketImpl)
        at java.net.ServerSocket.implAccept(ServerSocket.java:450)
        at java.net.ServerSocket.accept(ServerSocket.java:421)
        at org.netbeans.CLIHandler$Server.run(CLIHandler.java:980)

"Active Reference Queue Daemon" daemon prio=1 tid=0x0817b790 nid=0x364b in Object.wait() [0xb1cb8000..0xb1cb8fb0]
        at java.lang.Object.wait(Native Method)
        - waiting on <0x7f3df3a0> (a java.lang.ref.ReferenceQueue$Lock)
        at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:116)
        - locked <0x7f3df3a0> (a java.lang.ref.ReferenceQueue$Lock)
        at org.openide.util.Utilities$ActiveQueue.run(Utilities.java:3028)
        at java.lang.Thread.run(Thread.java:595)

"Low Memory Detector" daemon prio=1 tid=0x080a73f0 nid=0x3649 runnable [0x00000000..0x00000000]

"CompilerThread0" daemon prio=1 tid=0x080a5e88 nid=0x3648 waiting on condition [0x00000000..0xb215d818]

"Signal Dispatcher" daemon prio=1 tid=0x080a4f38 nid=0x3647 runnable [0x00000000..0x00000000]

"Finalizer" daemon prio=1 tid=0x0809e2f0 nid=0x3646 in Object.wait() [0xb23c4000..0xb23c5130]
        at java.lang.Object.wait(Native Method)
        - waiting on <0x7f3df548> (a java.lang.ref.ReferenceQueue$Lock)
        at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:116)
        - locked <0x7f3df548> (a java.lang.ref.ReferenceQueue$Lock)
        at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:132)
        at java.lang.ref.Finalizer$FinalizerThread.run(Finalizer.java:159)

"Reference Handler" daemon prio=1 tid=0x0809d640 nid=0x3645 in Object.wait() [0xb2445000..0xb24460b0]
        at java.lang.Object.wait(Native Method)
        - waiting on <0x7f3defd0> (a java.lang.ref.Reference$Lock)
        at java.lang.Object.wait(Object.java:474)
        at java.lang.ref.Reference$ReferenceHandler.run(Reference.java:116)
        - locked <0x7f3defd0> (a java.lang.ref.Reference$Lock)

"VM Thread" prio=1 tid=0x0809aaa0 nid=0x3644 runnable

"VM Periodic Task Thread" prio=1 tid=0x080a8898 nid=0x364a waiting on condition