WARNING [com.sun.tools.javac.jvm.ClassWriter]: ClassWriter.assembleClassSig: appears in the [uk.ac.sanger.mig.phenotyping.datacapture.dao.UploadMappingDao]'s signature. WARNING [com.sun.tools.javac.jvm.ClassWriter]: ClassWriter.assembleClassSig: appears in the [uk.ac.sanger.mig.customquery.dao.CustomQueryDao]'s signature. WARNING [com.sun.tools.javac.jvm.ClassWriter]: ClassWriter.assembleClassSig: appears in the [uk.ac.sanger.mig.customquery.dao.CustomQueryDao]'s signature. INFO [org.netbeans.modules.refactoring.spi.impl.ParametersPanel]: org.netbeans.modules.refactoring.api.AbstractRefactoring$ProgressL@1eb27ee9 called start multiple times INFO [org.netbeans.modules.refactoring.spi.impl.ParametersPanel]: org.netbeans.modules.refactoring.api.AbstractRefactoring$ProgressL@1eb27ee9 called start multiple times INFO [org.netbeans.modules.refactoring.spi.impl.ParametersPanel]: org.netbeans.modules.refactoring.api.RefactoringSession@22530b55 called start multiple times INFO [org.netbeans.modules.subversion]: Unable to get original file java.io.IOException: Unable to get BASE revision of /Users/alaw3/NetBeansProjects/SANDBOX/Ticket-5350/mousedb-model/src/main/java/uk/ac/sanger/mig/model/RoomNameAnimalCountTuple.java [catch] at org.netbeans.modules.subversion.Subversion.getOriginalFile(Subversion.java:623) at org.netbeans.modules.subversion.SubversionVCS.getOriginalFile(SubversionVCS.java:130) at org.netbeans.modules.versioning.DelegatingVCS.getOriginalFile(DelegatingVCS.java:141) at org.netbeans.modules.versioning.ui.diff.DiffSidebar.checkoutOriginalFiles(DiffSidebar.java:1023) at org.netbeans.modules.versioning.ui.diff.DiffSidebar.getText(DiffSidebar.java:953) at org.netbeans.modules.versioning.ui.diff.DiffSidebar.access$1500(DiffSidebar.java:115) at org.netbeans.modules.versioning.ui.diff.DiffSidebar$RefreshDiffTask.fetchOriginalContent(DiffSidebar.java:920) at org.netbeans.modules.versioning.ui.diff.DiffSidebar$RefreshDiffTask.computeDiff(DiffSidebar.java:889) at org.netbeans.modules.versioning.ui.diff.DiffSidebar$RefreshDiffTask.run(DiffSidebar.java:874) at org.openide.util.RequestProcessor$Task.run(RequestProcessor.java:1452) at org.openide.util.RequestProcessor$Processor.run(RequestProcessor.java:2032) WARNING [org.netbeans.modules.java.source.parsing.JavacParser]: ClassPath identity changed for /Users/alaw3/NetBeansProjects/SANDBOX/Ticket-5350/mousedb-model/src/main/java/uk/ac/sanger/mig/model/RoomNameAnimalCountTuple.java@883d077e:75ead002, class path owner: /Users/alaw3/NetBeansProjects/SANDBOX/Ticket-5350/mousedb-model (class org.netbeans.modules.maven.NbMavenProjectImpl) original sourcePath: /Users/alaw3/NetBeansProjects/SANDBOX/Ticket-5350/mousedb-model-impl/src/test/java:/Users/alaw3/NetBeansProjects/SANDBOX/Ticket-5350/mousedb-model/src/main/java:/Users/alaw3/NetBeansProjects/SANDBOX/Ticket-5350/mousedb-model-impl/src/main/java:/Users/alaw3/NetBeansProjects/SANDBOX/Ticket-5350/mousedb-model-impl/src/main/resources:/Users/alaw3/NetBeansProjects/SANDBOX/Ticket-5350/mousedb-dao/src/main/java:/Users/alaw3/NetBeansProjects/SANDBOX/Ticket-5350/mousedb-model/src/test/java:/Users/alaw3/NetBeansProjects/SANDBOX/Ticket-5350/mousedb-model-impl/src/test/resources new sourcePath: /Users/alaw3/NetBeansProjects/SANDBOX/Ticket-5350/mousedb-model/src/main/java:/Users/alaw3/NetBeansProjects/SANDBOX/Ticket-5350/mousedb-model/src/main/resources INFO [org.netbeans.modules.parsing.impl.indexing.RepositoryUpdater]: Resolving dependencies took: 5,849 ms INFO [org.netbeans.modules.parsing.impl.indexing.RepositoryUpdater]: Complete indexing of 0 binary roots took: 0 ms INFO [org.netbeans.modules.parsing.impl.indexing.RepositoryUpdater]: Indexing of: /Users/alaw3/NetBeansProjects/SANDBOX/Ticket-5350/mousedb-model/src/main/resources took: 18 ms (New or modified files: 0, Deleted files: 0) [Adding listeners took: 0 ms] INFO [org.netbeans.modules.parsing.impl.indexing.RepositoryUpdater]: Complete indexing of 1 source roots took: 18 ms (New or modified files: 0, Deleted files: 0) [Adding listeners took: 0 ms] WARNING [com.sun.tools.javac.jvm.ClassWriter]: ClassWriter.assembleClassSig: appears in the [uk.ac.sanger.mig.colony.dao.ColonyInfoDao]'s signature. WARNING [com.sun.tools.javac.jvm.ClassWriter]: ClassWriter.assembleClassSig: appears in the [uk.ac.sanger.mig.phenotyping.datacapture.dao.UploadMappingDao]'s signature. WARNING [com.sun.tools.javac.jvm.ClassWriter]: ClassWriter.assembleClassSig: appears in the [uk.ac.sanger.mig.customquery.dao.CustomQueryDao]'s signature. WARNING [com.sun.tools.javac.jvm.ClassWriter]: ClassWriter.assembleClassSig: appears in the [uk.ac.sanger.mig.customquery.dao.CustomQueryDao]'s signature. INFO [org.netbeans.modules.parsing.impl.TaskProcessor]: Task: class org.netbeans.modules.java.source.JavaSourceAccessor$CancelableTaskWrapper ignored cancel for 51 ms. INFO [org.netbeans.modules.parsing.impl.TaskProcessor]: Task: class org.netbeans.modules.java.source.JavaSourceAccessor$CancelableTaskWrapper ignored cancel for 53 ms. WARNING [org.netbeans.modules.progress.spi.InternalHandle]: Cannot finish a task that was never started at org.netbeans.modules.refactoring.spi.impl.RefactoringPanel$4.run(RefactoringPanel.java:808) INFO [org.netbeans.modules.parsing.impl.indexing.RepositoryUpdater]: Complete indexing of 0 binary roots took: 0 ms INFO [org.netbeans.modules.parsing.impl.indexing.RepositoryUpdater]: Indexing of: /Users/alaw3/NetBeansProjects/SANDBOX/Ticket-5350/mousedb-model-impl/src/main/java took: 565 ms (New or modified files: 0, Deleted files: 1) [Adding listeners took: 0 ms] INFO [org.netbeans.modules.parsing.impl.indexing.RepositoryUpdater]: Complete indexing of 1 source roots took: 565 ms (New or modified files: 0, Deleted files: 1) [Adding listeners took: 0 ms] INFO [org.netbeans.modules.mercurial]: version: null WARNING [org.netbeans.TopSecurityManager]: use of system property netbeans.user has been obsoleted in favor of InstalledFileLocator/Places at org.netbeans.modules.bugzilla.BugzillaConfig.getNBConfigPath(BugzillaConfig.java:334) WARNING [org.netbeans.TopSecurityManager]: use of system property netbeans.user has been obsoleted in favor of InstalledFileLocator/Places at org.netbeans.modules.bugtracking.ui.issue.cache.IssueStorage.getStorageRootFile(IssueStorage.java:576) WARNING [org.netbeans.ProxyClassLoader]: Will not load class org.apache.commons.logging.impl.Log4JLogger arbitrarily from one of NetbinoxLoader delegating to org.apache.commons.logging_1.1.0 and ModuleCL@7a1b0c08[org.netbeans.libs.amazon] starting from SystemClassLoader[549 modules]; see http://wiki.netbeans.org/DevFaqModuleCCE WARNING [org.netbeans.ProxyClassLoader]: Will not load class org.apache.commons.logging.impl.Jdk14Logger arbitrarily from one of NetbinoxLoader delegating to org.apache.commons.logging_1.1.0 and ModuleCL@7a1b0c08[org.netbeans.libs.amazon] starting from SystemClassLoader[549 modules]; see http://wiki.netbeans.org/DevFaqModuleCCE WARNING [org.netbeans.modules.bugzilla.Bugzilla]: status value START not between all statuses: [NEW, STARTED, REOPENED, RESOLVED, VERIFIED, CLOSED] INFO [org.netbeans.modules.parsing.impl.TaskProcessor]: Task: class org.netbeans.modules.java.source.JavaSourceAccessor$CancelableTaskWrapper ignored cancel for 79 ms. INFO [org.netbeans.modules.parsing.impl.TaskProcessor]: Task: class org.netbeans.modules.java.source.JavaSourceAccessor$CancelableTaskWrapper ignored cancel for 59 ms. INFO [org.netbeans.modules.bugzilla.Bugzilla]: Bugzilla repository [https://netbeans.org/bugzilla] has version 4.0.7.